cosmic-mcp

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galaxy-mcp

io.github.galaxyproject/galaxy-mcp ยท version 1.3.0

Community listing. Not installed or verified by cosmic-mcp. Read the source and its permissions before you run it.

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

https://github.com/galaxyproject/galaxy-mcp

Quick facts

  • Listing: Community
  • Published Jan 29, 13:34 UTC
  • Transport: stdio
  • Package: pypi galaxy-mcp 1.3.0
  • Listed by cosmic-mcp: Nov 9, 04:26 UTC

Workflow automation

Setup snippets

Generated from the registry entry. cosmic-mcp has not run or reviewed this server; values in angle brackets are yours to fill in.

Run it locally (pypi)

uvx 'galaxy-mcp==1.3.0'

Claude Desktop (claude_desktop_config.json)

{
  "mcpServers": {
    "galaxy-mcp": {
      "args": [
        "galaxy-mcp==1.3.0"
      ],
      "command": "uvx",
      "env": {
        "GALAXY_API_KEY": "<your galaxy api key>",
        "GALAXY_URL": "<your galaxy url>"
      }
    }
  }
}

Claude Code

claude mcp add 'galaxy-mcp' -- uvx 'galaxy-mcp==1.3.0'

Cursor (.cursor/mcp.json)

{
  "mcpServers": {
    "galaxy-mcp": {
      "args": [
        "galaxy-mcp==1.3.0"
      ],
      "command": "uvx",
      "env": {
        "GALAXY_API_KEY": "<your galaxy api key>",
        "GALAXY_URL": "<your galaxy url>"
      }
    }
  }
}

VS Code (.vscode/mcp.json)

{
  "servers": {
    "galaxy-mcp": {
      "args": [
        "galaxy-mcp==1.3.0"
      ],
      "command": "uvx",
      "env": {
        "GALAXY_API_KEY": "<your galaxy api key>",
        "GALAXY_URL": "<your galaxy url>"
      },
      "type": "stdio"
    }
  }
}

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