cosmic-mcp

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Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)

io.github.K-Dense-AI/labmcp-ms-data ยท version 0.1.1

Community listing. Not installed or verified by cosmic-mcp. Read the source and its permissions before you run it.

MCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert.

https://github.com/K-Dense-AI/lab-instrument-mcps

Quick facts

  • Listing: Community
  • Published Sep 26, 22:46 UTC
  • Transport: stdio
  • Package: pypi labmcp-ms-data 0.1.1
  • Listed by cosmic-mcp: Nov 9, 04:25 UTC

Files and storage

Setup snippets

Generated from the registry entry. cosmic-mcp has not run or reviewed this server; values in angle brackets are yours to fill in.

Run it locally (pypi)

uvx 'labmcp-ms-data==0.1.1'

Claude Desktop (claude_desktop_config.json)

{
  "mcpServers": {
    "labmcp-ms-data": {
      "args": [
        "labmcp-ms-data==0.1.1"
      ],
      "command": "uvx",
      "env": {
        "LABMCP_ADDRESS": "<your labmcp address>",
        "LABMCP_LIMITS": "<your labmcp limits>",
        "LABMCP_READ_ONLY": "<your labmcp read only>",
        "LABMCP_SIMULATE": "<your labmcp simulate>"
      }
    }
  }
}

Claude Code

claude mcp add 'labmcp-ms-data' -- uvx 'labmcp-ms-data==0.1.1'

Cursor (.cursor/mcp.json)

{
  "mcpServers": {
    "labmcp-ms-data": {
      "args": [
        "labmcp-ms-data==0.1.1"
      ],
      "command": "uvx",
      "env": {
        "LABMCP_ADDRESS": "<your labmcp address>",
        "LABMCP_LIMITS": "<your labmcp limits>",
        "LABMCP_READ_ONLY": "<your labmcp read only>",
        "LABMCP_SIMULATE": "<your labmcp simulate>"
      }
    }
  }
}

VS Code (.vscode/mcp.json)

{
  "servers": {
    "labmcp-ms-data": {
      "args": [
        "labmcp-ms-data==0.1.1"
      ],
      "command": "uvx",
      "env": {
        "LABMCP_ADDRESS": "<your labmcp address>",
        "LABMCP_LIMITS": "<your labmcp limits>",
        "LABMCP_READ_ONLY": "<your labmcp read only>",
        "LABMCP_SIMULATE": "<your labmcp simulate>"
      },
      "type": "stdio"
    }
  }
}

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