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BioMCP-TS

io.github.yeyuan98/biomcp-ts ยท version 1.4.3

Community listing. Not installed or verified by cosmic-mcp. Read the source and its permissions before you run it.

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

https://github.com/yeyuan98/biomcp-ts

Quick facts

  • Listing: Community
  • Published Sep 14, 02:34 UTC
  • Transport: stdio
  • Package: npm biomcp 1.4.3
  • Listed by cosmic-mcp: Nov 9, 04:27 UTC

Other

Setup snippets

Generated from the registry entry. cosmic-mcp has not run or reviewed this server; values in angle brackets are yours to fill in.

Run it locally (npm)

npx -y '[email protected]'

Claude Desktop (claude_desktop_config.json)

{
  "mcpServers": {
    "biomcp-ts": {
      "args": [
        "-y",
        "[email protected]"
      ],
      "command": "npx",
      "env": {
        "ANALYSIS_BIOWASM": "<your analysis biowasm>",
        "ANALYSIS_R": "<your analysis r>",
        "DB_TYPE": "<your db type>",
        "DISGENET_API_KEY": "<your disgenet api key>",
        "NCBI_API_KEY": "<your ncbi api key>",
        "ONCOKB_TOKEN": "<your oncokb token>",
        "OPENFDA_API_KEY": "<your openfda api key>",
        "S2_API_KEY": "<your s2 api key>"
      }
    }
  }
}

Claude Code

claude mcp add 'biomcp-ts' -- npx -y '[email protected]'

Cursor (.cursor/mcp.json)

{
  "mcpServers": {
    "biomcp-ts": {
      "args": [
        "-y",
        "[email protected]"
      ],
      "command": "npx",
      "env": {
        "ANALYSIS_BIOWASM": "<your analysis biowasm>",
        "ANALYSIS_R": "<your analysis r>",
        "DB_TYPE": "<your db type>",
        "DISGENET_API_KEY": "<your disgenet api key>",
        "NCBI_API_KEY": "<your ncbi api key>",
        "ONCOKB_TOKEN": "<your oncokb token>",
        "OPENFDA_API_KEY": "<your openfda api key>",
        "S2_API_KEY": "<your s2 api key>"
      }
    }
  }
}

VS Code (.vscode/mcp.json)

{
  "servers": {
    "biomcp-ts": {
      "args": [
        "-y",
        "[email protected]"
      ],
      "command": "npx",
      "env": {
        "ANALYSIS_BIOWASM": "<your analysis biowasm>",
        "ANALYSIS_R": "<your analysis r>",
        "DB_TYPE": "<your db type>",
        "DISGENET_API_KEY": "<your disgenet api key>",
        "NCBI_API_KEY": "<your ncbi api key>",
        "ONCOKB_TOKEN": "<your oncokb token>",
        "OPENFDA_API_KEY": "<your openfda api key>",
        "S2_API_KEY": "<your s2 api key>"
      },
      "type": "stdio"
    }
  }
}

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